Fully automated solution for SARS-CoV-2

NGS-based testing data analysis

Cloud-based solution designed by Flomics

Our world is dealing with a global pandemic that threatens life as we know it. The rapidly spreading coronavirus SARS-CoV-2 is a major public health emergency. Worldwide, scientists and healthcare providers are working together to provide information and solutions to fight this disease. As part of this healthcare community, Flomics is actively monitoring and contributing to the latest research findings, especially in the Next Generation Sequencing (NGS) field.

Flomics has joined forces with international biotech partners, specialized in NGS tests, to develop a cloud-based solution for COVID19 detection and research. Whether you work in a hospital, clinic or research laboratory, with a few clicks you can transform your raw data into interpretable clinical information that will help manage this pandemic, without the need for bioinformatics expertise.

Flomics team offers end-to-end support from experimental setup selection to customized data reporting.

Automated COVID-19 next generation sequencing data analysis

Access FlomicsCOVID19 platform

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Our pipeline will automatically take your data through the following steps:

  • Quality control

  • Adapter trimming

  • Primer removal (for amplicon data)

  • Viral load calculation

  • Read alignment

  • Variant calling and annotation

  • Strain identification

  • Intuitive reporting


A pipeline adapted to your needs:

  • Metagenomic, Amplicon-seq
  • Compatible with all sequencing platforms: Illumina, MGI, …
  • Always up-to-date with the latest SARS-CoV-2 genome databases
Ready for data from:
  • Any targeted SARS-CoV-2 Amplicon sequencing kit

  • Your usual Total RNA kit for shotgun metagenomics

  • Get in touch and we can assist you in the optimal experimental setup


Reproducibility is our top priority:

  • OS-independent (it runs on the cloud)
  • Nextflow based pipeline
  • Docker integration


Complete integration on the cloud:

  • Running on AWS
  • Fast, scalable to your needs
  • Simple User Interface
  • No need for computational facilities
  • No need for bioinformatics skills
Our partners:

Inquire for more info and account creation: